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CorGen

CorGen

CorGen is a web-based tool to measure long-range correlations in DNA sequences characterized by a power-law decay of the autocorrelation function of the GC-content. CorGen also has a function that generates random DNA sequences with user-specified parameters, alternatively by using the parameters obtained from another DNA sequence.

Topic

DNA; Sequence composition, complexity and repeats; Sequence analysis; Sequencing

Details

  • Operation: Sequence composition calculation; Sequence generation; Random sequence generation; Sequence alignment analysis (site correlation)
  • Software interface: Web user interface
  • Language: -
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Credit: The Max-Planck Institute for Molecular Genetics
  • Contact: philipp.messer _at_ molgen.mpg.de
  • Collection: -

Publications

Messer PW, Arndt PF "CorGen--measuring and generating long-range correlations for DNA sequence analysis." Nucleic Acids Res. 2006; 34(Web Server issue):W692-5 https://doi.org/10.1093/nar/gkl234
PMID: 16845099
PMCID: PMC1538783


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