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DAMBE7

DAMBE7

DAMBE7 is a tool for genomic and phylogenetic sequence data analysis. The DAMBE7 package includes functions for 1. Sequence alignment, 2. Molecular phylogenetics, 3. Position weight matrix to analyze sequence motifs, 4. Perceptron for classification of sequence motifs, 5. Gibbs sampler, 6. Hidden Markov models, 7. Secondary structure prediction, 8. rRNA anticodon identification, 9. Codon usage bias, 10. Computation of isoelectric point, and 11. Peptide mass fingerprinting. DAMBE7 works with a variety of well-known sequence formats.

Topic

Phylogenetics; Genomics; Nucleic acid structure analysis

Details

  • Operation: Phylogenetic tree analysis; Sequence alignment
  • Software interface: Graphical user interface
  • Language: -
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Credit: Natural Science and Engineering Research Council of Canada.
  • Contact: xxia _at_ uottawa.ca
  • Collection: -

Publications

Xia X "DAMBE7: New and Improved Tools for Data Analysis in Molecular Biology and Evolution." Mol. Biol. Evol. 2018; 35(6):1550-1552 https://doi.org/10.1093/molbev/msy073
PMID: 29669107
PMCID: PMC5967572


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