DAMBE7

DAMBE7 is a tool for genomic and phylogenetic sequence data analysis. The DAMBE7 package includes functions for 1. Sequence alignment, 2. Molecular phylogenetics, 3. Position weight matrix to analyze sequence motifs, 4. Perceptron for classification of sequence motifs, 5. Gibbs sampler, 6. Hidden Markov models, 7. Secondary structure prediction, 8. rRNA anticodon identification, 9. Codon usage bias, 10. Computation of isoelectric point, and 11. Peptide mass fingerprinting. DAMBE7 works with a variety of well-known sequence formats.