Dfam is a web-based database containing transposable Element DNA sequence alignments (interspersed repeats), Hidden Markov Models (HMMs), consensus sequences, and genome annotations. The Dfam database represents the transposable element alignments as families together with annotations.
Sequence analysis; Sequence composition, complexity and repeats
Hubley R, Finn RD, Clements J, Eddy SR, Jones TA, Bao W, Smit AF, Wheeler TJ "The Dfam database of repetitive DNA families." Nucleic Acids Res, 2016 https://doi.org/10.1093/nar/gkv1272
Wheeler TJ, Clements J, Eddy SR, Hubley R, Jones TA, Jurka J, Smit AF, Finn RD "Dfam: a database of repetitive DNA based on profile hidden Markov models." Nucleic Acids Res, 2013 https://doi.org/10.1093/nar/gks1265
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