Orchid is a machine learning framework tool to manage, annotate, and analyze cancer mutations to support the knowledge of tumor genetic data. Example of usage: Sub-typing aggressive vs. non-aggressive prostate cancer using mutational profiles in tumor sequence data. NOTE: Orchid requires code or data under separate licenses or copyrights restricting the usage to non-commercial activities.
Oncology; Genetic variation; Machine learning; Nucleic acid structure analysis
Cario CL, Witte JS "Orchid: a novel management, annotation and machine learning framework for analyzing cancer mutations." Bioinformatics 2018; 34(6):936-942 https://doi.org/10.1093/bioinformatics/btx709
PMID: 29106441
PMCID: PMC5860353
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