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PlotRep
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PlotRep

PLOTREP is a web-based tool to visualize dispersed genomic repeats. The PLOTREP algorithm merges similar repeat copies and visualizes the results alike to dot plots.



PlotRep

PLOTREP is a web-based tool to visualize dispersed genomic repeats. The PLOTREP algorithm merges similar repeat copies and visualizes the results alike to dot plots.

Topic

Sequence composition, complexity and repeats

Details

  • Operation: Repeat sequence analysis
  • Software interface: Web user interface
  • Language: Perl, JavaScript
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
    • Cost: Free
  • Version name: -
    • Maturity: Legacy
  • Credit: European grant Grain Legumes, NKFP (Hungarian Science and Development Program) Medicago Biotechnology, OTKA (Hungarian Scientific Research Fund), Bolyai Postdoctoral Fellowship from the Hungarian Academy of Sciences.
  • Contact: -
  • Collection: -

Publications

Tóth G, Deák G, Barta E, Kiss GB "PLOTREP: a web tool for defragmentation and visual analysis of dispersed genomic repeats." Nucleic Acids Res. 2006; 34(Web Server issue):W708-13 https://doi.org/10.1093/nar/gkl263
PMID: 16845104
PMCID: PMC1538846


Download and documentation

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