For better experience, turn on JavaScript!


PyBamView

PyBamView

PyBamView is a tool to visualize sequence alignments from BAM files with an optiontional of FASTA-formated reference genome. The PyBamView algorithm renders Single-nucleotide polymorphism (SNP), insertions, and deletions and provides an export function for the creation of publication-ready figures.

Topic

Sequence analysis; Nucleic acid structure analysis; DNA

Details

  • Operation: Sequence visualisation
  • Input: BAM, FASTA
  • Output: -
  • Software interface: Command-line user interface
  • Language: Python
  • Operating system: Linux
  • License: The MIT License
  • Cost: Free
  • Version name: -
  • Credit: National Defense Science and Engineering Graduate Fellowship
  • Contact: mgymrek _at_ mit.edu
  • Collection: -

Publications

Gymrek M "PyBamView: a browser-based application for viewing short read alignments." Bioinformatics 2014; 30(23):3405-7 https://doi.org/10.1093/bioinformatics/btu565
PMID: 25147359


Download and documentation




You may also like:



If you find errors, please report here.