For better experience, turn on JavaScript!

REPuter
Home » Tools » DNA Sequence Analysis Tools » REPuter

REPuter

REPuter is a tool to study repetitive DNA on a genomic scale. The REPuter algorithm detects various types of repeats, reports statistical significance, and has interactive visualization.



REPuter

REPuter is a tool to study repetitive DNA on a genomic scale. The REPuter algorithm detects various types of repeats, reports statistical significance, and has interactive visualization.

Topic

Sequence composition, complexity and repeats; DNA; Genomics

Details

  • Operation: Repeat sequence detection; Map drawing
  • Input: Raw nucleic acid sequence; .txt; FASTQ; FASTA; XML; EMBL
  • Output: Nucleic acid features
  • Software interface: Command-line user interface; Web user interface
  • Language: -
  • Operating system: Linux; Mac OS X
  • License: Other
    • Cost: Free
  • Version name: -
    • Maturity: Mature
  • Credit: The Deutsche Forschungsgemeinschaft, the DFG-Graduiertenkolleg 635 Bioinformatik
  • Contact: bibi-help _at_ cebitec.uni-bielefeld.de
  • Collection: -

Publications

Kurtz S, Choudhuri JV, Ohlebusch E, Schleiermacher C, Stoye J, Giegerich R "REPuter: the manifold applications of repeat analysis on a genomic scale." Nucleic Acids Res. 2001; 29(22):4633-42 https://doi.org/10.1093/nar/29.22.4633
PMID: 11713313
PMCID: PMC92531


Download and documentation







If you find errors, please report here.

SECTIONS

Tutorials
In-house software
Blog
News
Find Jobs
History
Definition of Bioinformatics
ENCYCLOPEDIA
COVID-19
⚬ Timeline of outbreak
⚬ Blog
⚬ Scientific Facts
⚬ Daily statistics
⚬ News


TOOLS


1. SNP Tools
2. GWAS Tools
3. Genotype Imputation Tools
4. MSA tools
5. CNV tools
6. WGA tools
7. RNA-seq tools
8. Proteomics Tools
9. Nucleic Acid Structure Analysis Tools
10. Nucleic Acid Sequence Analysis Tools
11. Sequence Logo Tools
12. In-house Software Tools

Find thousands of Bioinformatics and Life Science software tools and databases in the newly launched




Ads