RepeatAnalyzer is a tool to store, manage, and analyze short sequence repeats (SSRs) to identify strains. The RepeatAnalyzer uses Anaplasma marginale as a model species, but the tool can analyze any SSRs in any species. The RepeatAnalyzer algorithm uses regional genetic diversity as a part of analyses and has functions for visualizing genotype and SSR distributions.
Population genetics; Mapping; Metagenomics
Catanese HN, Brayton KA, Gebremedhin AH "RepeatAnalyzer: a tool for analysing and managing short-sequence repeat data." BMC Genomics. 2016 Jun 3;17:422. https://doi.org/10.1186/s12864-016-2686-2
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