For better experience, turn on JavaScript!


RepeatAnalyzer

RepeatAnalyzer

RepeatAnalyzer is a tool to store, manage, and analyze short sequence repeats (SSRs) to identify strains. The RepeatAnalyzer uses Anaplasma marginale as a model species, but the tool can analyze any SSRs in any species. The RepeatAnalyzer algorithm uses regional genetic diversity as a part of analyses and has functions for visualizing genotype and SSR distributions.

Topic

Population genetics; Mapping; Metagenomics

Details

  • Operation: Repeat sequence detection
  • Software interface: Command-line user interface
  • Language: Python
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: GNU GPL v3
  • Cost: Free
  • Version name: -
  • Credit: The School of Electrical Engineering and Computer Science, Washington State University, NSF CAREER award
  • Contact: assefaw _at_ eecs.wsu.edu
  • Collection: -

Publications

Catanese HN, Brayton KA, Gebremedhin AH "RepeatAnalyzer: a tool for analysing and managing short-sequence repeat data." BMC Genomics. 2016 Jun 3;17:422. https://doi.org/10.1186/s12864-016-2686-2
PMID: 27260942
PMCID: PMC4891823


Download and documentation




You may also like:



If you find errors, please report here.