RepeatExplorer pipeline tool is for the identification and characterization of DNA repeats in plant and animal genomes using high-throughput data sets. The RepeatExplorer algorithm utilizes graph-based clustering.
DNA polymorphism; Mobile genetic elements
Novák P, Neumann P, Macas J "Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data." BMC Bioinformatics 2010 https://doi.org/10.1186/1471-2105-11-378
Novák P, Neumann P, Pech J, Steinhaisl J, Macas J "RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads." Bioinformatics, 2013 https://doi.org/10.1093/bioinformatics/btt054
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