RepeatModeler is a tool to find transposable elements and consists of three programs to compute repeat boundaries and classify family relationships from DNA sequence data sets:
RECONRepeatScoutLtrHarvest/Ltr_retriever
Sequence composition, complexity and repeats; Sequence composition, complexity and repeats
Flynn JM, Hubley R, Goubert C, Rosen J, Clark AG, Feschotte C, Smit AF "RepeatModeler2 for automated genomic discovery of transposable element families" Proc Natl Acad Sci U S A. 2020 Apr 28;117(17):9451-9457 https://doi.org/10.1073/pnas.1921046117
PMID: 32300014
PMCID: PMC7196820
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