RepeatRunner is a pipeline tool to identify repeated sequences in DNA sequences. The RepeatRunner algorithm uses RepeatMasker to search nucleotide libraries of knowns repeats and BLASTX searches.
Sequence composition, complexity and repeats; DNA
Smith CD, Edgar RC, Yandell MD, Smith DR, Celniker SE, Myers EW, Karpen GH "Improved repeat identification and masking in Dipterans." Gene 2007; 389(1):1-9 https://doi.org/10.1016/j.gene.2006.09.011
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