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SBARS

SBARS

SBARS (Spectral-Based Approach for Repeats Search) is a tool to identify various types of repeats. The SBARS algorithm uses spectral methods to profile nucleotide sequences on multiple scales to decrease the running time for creating dot plots.

Topic

Sequencing; Sequence composition, complexity and repeats; DNA

Details

  • Operation: Repeat sequence detection
  • Software interface: Graphical user interface
  • Language: C++
  • Operating system: Linux; Microsoft Windows
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Credit: Russian Foundation for Basic Research, Intel Company, T-Platforms Company
  • Contact: mpyatkov _at_ gmail.com
  • Collection: -

Publications

Pyatkov MI, Pankratov AN "SBARS: fast creation of dotplots for DNA sequences on different scales using GA-,GC-content." Bioinformatics 2014; 30(12):1765-6 https://doi.org/10.1093/bioinformatics/btu095
PMID: 24532721


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