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Satellog

Satellog

Satellog is a database to identify and dynamically prioritize repeats by using various characteristics, for example, repeat unit, repeat length percentile rank, class, period, total length, genomic coordinates, UniGene polymorphism profile, proximity to or presence within gene regions, such as CDS, UTR, location upstream.

Topic

DNA polymorphism; Pathology; Genetic variation; Sequence composition, complexity and repeats; GWAS study

Details

  • Operation: Repeat sequence detection; Polymorphism detection; Repeat sequence analysis; Gene expression profiling; Repeat sequence organisation analysis
  • Software interface: Database
  • Language: SQL;Perl
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Credit: -
  • Contact: perseusm _at_ bcgsc.ca | satellog _at_ bcgsc.ca
  • Collection: -

Publications

Missirlis PI, Mead CL, Butland SL, Ouellette BF, Devon RS, Leavitt BR, Holt RA "Satellog: a database for the identification and prioritization of satellite repeats in disease association studies." BMC Bioinformatics 2005 https://doi.org/10.1186/1471-2105-6-145
PMID: 15949044
PMCID: PMC1181805


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