For better experience, turn on JavaScript!

TRF
Home » Tools » DNA Sequence Analysis Tools » TRF

TRF

Tandem Repeats Finder is a tool to find tandem repeats in DNA sequences. The Tandem Repeats Finder algorithm uses k-tuples for matching to speed up the computation and computes consensus sequences.



TRF

Tandem Repeats Finder is a tool to find tandem repeats in DNA sequences. The Tandem Repeats Finder algorithm uses k-tuples for matching to speed up the computation and computes consensus sequences.

Topic

Sequence analysis; Sequence composition, complexity and repeats

Details

  • Operation: Repeat sequence detection
  • Input: FASTA
  • Output: Repeat table; alignment
  • Software interface: Command-line user interface; Web user interface
  • Language: C
  • Operating system: Linux; Mac OS X
  • License: GNU AGPL v3.0
    • Cost: Free
  • Version name: 4.09.1
    • Maturity: Mature
  • Credit: National Science Foundation (NSF)
  • Contact: benson _at_ ecology.biomath.mssm.edu
  • Collection: -

Publications

Benson G "Tandem repeats finder: a program to analyze DNA sequences." Nucleic Acids Res. 1999; 27(2):573-80 https://doi.org/10.1093/nar/27.2.573
PMID: 9862982
PMCID: PMC148217


Download and documentation







If you find errors, please report here.

SECTIONS

Tutorials
In-house software
Blog
News
Find Jobs
History
Definition of Bioinformatics
ENCYCLOPEDIA
COVID-19
⚬ Timeline of outbreak
⚬ Blog
⚬ Scientific Facts
⚬ Daily statistics
⚬ News


TOOLS


1. SNP Tools
2. GWAS Tools
3. Genotype Imputation Tools
4. MSA tools
5. CNV tools
6. WGA tools
7. RNA-seq tools
8. Proteomics Tools
9. Nucleic Acid Structure Analysis Tools
10. Nucleic Acid Sequence Analysis Tools
11. Sequence Logo Tools
12. In-house Software Tools

Find thousands of Bioinformatics and Life Science software tools and databases in the newly launched




Ads