Tuiuiu is a software tool that filters multiple repeats using the criterion of edit distance. Tuiuiu is useful as a preprocessing step in the construction of multiple sequence alignments. Note that the home page is no longer accessible. Tuiuiu might be available from the authors of this software.
Peterlongo P, Sacomoto GA, do Lago AP, Pisanti N, Sagot MF "Lossless filter for multiple repeats with bounded edit distance." Algorithms Mol Biol 2009 https://doi.org/10.1186/1748-7188-4-3
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