cpgplot is a tool for plotting and identification of CpG islands in nucleotide sequences. The cpgplot algorithm computes CpG islands in overlapping windows along a sequence and by default defines a CpG island where the percent G + C is more than 50% and the observed vs. expected ratio is over 0.6. The minimum length of the region is 200 bases and at least 10 windows.
Sequence composition, complexity and repeats
Rice P, Longden I, Bleasby A "EMBOSS: the European Molecular Biology Open Software Suite." Trends Genet. 2000; 16(6):276-7 https://doi.org/10.1016/s0168-9525(00)02024-2
PMID: 10827456
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