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detectIR

detectIR

detectIR is a tool to find perfect and imperfect repeats and inverted repeats in DNA sequences. The detectIR algorithm uses vector calculation of complex numbers.

Topic

DNA structural variation; Sequence composition, complexity and repeats

Details

  • Operation: Repeat sequence detection
  • Software interface: Script
  • Language: MATLAB
  • Operating system: Linux
  • License: CC BY-NC 3.0
  • Cost: Free
  • Version name: -
  • Credit: The National Institutes of Health (NIH) National Institute of General Medical Sciences, the National Natural Science Foundation of China, the Natural Science Foundation of Fujian Province of China, the specialized Research Fund for the Doctoral Program of Higher Education of China, the Fundamental Research Funds for the Central Universities in China
  • Contact: liangc _at_ miamioh.edu
  • Collection: -

Publications

Ye C, Ji G, Li L, Liang C "detectIR: a novel program for detecting perfect and imperfect inverted repeats using complex numbers and vector calculation." PLoS ONE 2014; 9(11):e113349 https://doi.org/10.1371/JOURNAL.PONE.0113349
PMID: 25409465
PMCID: PMC4237412


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