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eShadow
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eShadow

eShadow is a web-based tool for comparative nucleotide sequence analysis. The eShadow algorithm uses two statistical methods. And can train an underlying Hidden Markov Model to predict functional sequences.



eShadow

eShadow is a web-based tool for comparative nucleotide sequence analysis. The eShadow algorithm uses two statistical methods. And can train an underlying Hidden Markov Model to predict functional sequences.

Topic

Sequence analysis; Phylogenetics; Computational biology

Details

  • Operation: Sequence analysis
  • Software interface: Web user interface
  • Language: -
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
    • Cost: Free
  • Version name: -
    • Maturity: Mature
  • Credit: U.S. Department of Energy by the University of California, Lawrence Livermore National Laboratory, Lawrence Berkeley National Laboratory Contract.
  • Contact: ovcharen _at_ nih.gov
  • Collection: -

Publications

Ovcharenko I, Boffelli D, Loots GG "eShadow: a tool for comparing closely related sequences." Genome Res. 2004; 14(6):1191-8 https://doi.org/10.1101/gr.1773104
PMID: 15173121
PMCID: PMC419798


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