einverted

einverted is a tool for finding inverted repeats, or stem-loops, in nucleotide sequences. The einverted algorithm uses dynamic programming for the local alignments.

Topic

Sequence composition, complexity and repeats

Details

Operation: Repeat sequence detection; RNA secondary structure prediction
Input: Nucleotide sequence
Output: Report; Sequence record
Software interface: Graphical user interface
Language: C
Operating system: Linux; Mac OS X; Microsoft Windows
License: GNU GPL v3

Cost

Version name: 6.x

Maturity:

Credit: -
Contact: emboss _at_ emboss.open-bio.org;emboss _at_ emboss.open-bio.org;emboss-bug _at_ emboss.open-bio.org
Collection: EMBOSS

Publications

Rice P, Longden I, Bleasby A "EMBOSS: the European Molecular Biology Open Software Suite." Trends Genet. 2000; 16(6):276-7 https://doi.org/10.1016/s0168-9525(00)02024-2
PMID: 10827456

Download and documentation

Source: http://emboss.open-bio.org/html/adm/ch01
s01.html
Documentation: http://emboss.open-bio.org/rel/rel6/apps
/einverted.html
Home page: http://emboss.open-bio.org/rel/rel6/apps
/einverted.html

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einverted

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