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einverted

einverted

einverted is a tool for finding inverted repeats, or stem-loops, in nucleotide sequences. The einverted algorithm uses dynamic programming for the local alignments.

Topic

Sequence composition, complexity and repeats

Details

  • Operation: Repeat sequence detection; RNA secondary structure prediction
  • Input: Nucleotide sequence
  • Output: Report; Sequence record
  • Software interface: Graphical user interface
  • Language: C
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: GNU GPL v3
  • Cost: Free
  • Version name: 6.x
  • Maturity: Mature
  • Credit: -
  • Contact: emboss _at_ emboss.open-bio.org;emboss _at_ emboss.open-bio.org;emboss-bug _at_ emboss.open-bio.org
  • Collection: EMBOSS

Publications

Rice P, Longden I, Bleasby A "EMBOSS: the European Molecular Biology Open Software Suite." Trends Genet. 2000; 16(6):276-7 https://doi.org/10.1016/s0168-9525(00)02024-2
PMID: 10827456


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