For better experience, turn on JavaScript!



einverted is a tool for finding inverted repeats, or stem-loops, in nucleotide sequences. The einverted algorithm uses dynamic programming for the local alignments.


Sequence composition, complexity and repeats


  • Operation: Repeat sequence detection; RNA secondary structure prediction
  • Input: Nucleotide sequence
  • Output: Report; Sequence record
  • Software interface: Graphical user interface
  • Language: C
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: GNU GPL v3
  • Cost: Free
  • Version name: 6.x
  • Maturity: Mature
  • Credit: -
  • Contact: emboss _at_;emboss _at_;emboss-bug _at_
  • Collection: EMBOSS


Rice P, Longden I, Bleasby A "EMBOSS: the European Molecular Biology Open Software Suite." Trends Genet. 2000; 16(6):276-7
PMID: 10827456

Download and documentation

You may also like:

If you find errors, please report here.