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equicktandem

equicktandem

equicktandem is a tool to detect nucleotide sequence sections that potentially contain repeats in tandem. The equicktandem algorithm identifies segments of sequences where bases match elsewhere in the sequence without gaps. The equicktandem algorithm scores each match with +1 and each mismatch with -1.

Topic

Sequence composition, complexity and repeats

Details

  • Operation: Repeat sequence detection
  • Input: Nucleic acid record
  • Output: Sequence report
  • Software interface: Command-line user interface
  • Language: C
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: GNU GPL v3
  • Cost: Free
  • Version name: -
  • Maturity: Mature
  • Credit: -
  • Contact: emboss _at_ emboss.open-bio.org;emboss _at_ emboss.open-bio.org;emboss-bug _at_ emboss.open-bio.org
  • Collection: EMBOSS

Publications

Rice P, Longden I, Bleasby A "EMBOSS: the European Molecular Biology Open Software Suite." Trends Genet. 2000; 16(6):276-7 https://doi.org/10.1016/s0168-9525(00)02024-2
PMID: 10827456


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