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supermatcher

supermatcher

supermatcher is a tool to compute approximate alignments between search sequences and the target sequences, for example, sequences in a database. The supermatcher algorithm determines likely matching sequences utilizing word matches and produces the sequence alignments using the Smith-Waterman local alignment method.

Topic

Nucleic acid structure analysis

Details

  • Operation: Pairwise sequence alignment
  • Input: USA
  • Output: Pair-wise sequence alignment
  • Software interface: Command-line user interface
  • Language: C
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: GNU GPL v3
  • Cost: Free
  • Version name: 6.4.0.0
  • Maturity: Mature
  • Credit: -
  • Contact: emboss _at_ emboss.open-bio.org;emboss _at_ emboss.open-bio.org;emboss-bug _at_ emboss.open-bio.org
  • Collection: EMBOSS

Publications

Rice P, Longden I, Bleasby A "EMBOSS: the European Molecular Biology Open Software Suite." Trends Genet. 2000; 16(6):276-7 https://doi.org/10.1016/s0168-9525(00)02024-2
PMID: 10827456


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