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Anaconda (USTC)

Anaconda (USTC)

A pipeline tool for detection and annotation of somatic copy number variation (CNV). The algorithm includes the following CNV detection methods: ExomeCNV, FREEC, ADTEx and EXCAVATOR.


Exome sequencing; Sequence analysis; DNA structural variation


  • Operation: Variation detection
  • Software interface: Command-line user interface
  • Language: R;Java;Perl;Python
  • Operating system: Linux
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Credit: The National Key Research and Developmental Program of China (2016YFC1000600), National Basic Research Program of China (2013CB945502 and 2014CB943101), the Strategic Priority Research Program of the Chinese Academy of Sciences (XDB19000000), the National Natural Science Foundation of China (31,630,050, 31,371,519, 31,501,202, 31,501,199 and 31,301,227), the Natural Science Foundation of China - Israel Science Foundation (31461143013–1183/14), the Fundamental Research Funds for the Central Universities (WK2340000069).
  • Contact: biojxh _at_;zyuanwei _at_
  • Collection: -


Gao J, Wan C, Zhang H, Li A, Zang Q, Ban R, Ali A, Yu Z, Shi Q, Jiang X, Zhang Y "Anaconda: AN automated pipeline for somatic COpy Number variation Detection and Annotation from tumor exome sequencing data." BMC Bioinformatics. 2017 Oct 3;18(1):436
PMID: 28974218
PMCID: PMC5627484

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