CANOES is a tool for detection of copy number variation (CNV) in whole-genome exome sequencing data. The CANOES algorithm uses the negative binomial distribution to model read counts and a regression-based method on user-selected reference samples.
Daniel Backenroth, Jason Homsy, Laura R. Murillo, Joe Glessner, Edwin Lin, Martina Brueckner, Richard Lifton, Elizabeth Goldmuntz, Wendy K. Chung, Yufeng Shen "CANOES: detecting rare copy number variants from whole exome sequencing data." Nucleic Acids Research, Volume 42, Issue 12, 8 July 2014, Page e97 https://doi.org/10.1093/nar/gku345
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