For better experience, turn on JavaScript!

CANOES
Home » Tools » CNV Tools » CANOES

CANOES

CANOES is a tool for detection of copy number variation (CNV) in whole-genome exome sequencing data. The CANOES algorithm uses the negative binomial distribution to model read counts and a regression-based method on user-selected reference samples.



CANOES

CANOES is a tool for detection of copy number variation (CNV) in whole-genome exome sequencing data. The CANOES algorithm uses the negative binomial distribution to model read counts and a regression-based method on user-selected reference samples.

Topic

Genetic variation

Details

  • Operation: Variation detection
  • Software interface: Command-line user interface
  • Language: R
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
    • Cost: Free
  • Version name: -
  • Credit: Department of Systems Biology at Columbia University, Columbia Genome Center, National Institutes of Health (NIH); National Heart, Lung and Blood Institute (NHLBI), Pediatric Cardiac Genomics Consortium, John S. LaDue Memorial Fellowship at Harvard Medical School
  • Contact: Daniel Backenroth db2175 _at_ columbia.edu | Yufeng Shen ys2411 _at_ columbia.edu
  • Collection: -

Publications

Daniel Backenroth, Jason Homsy, Laura R. Murillo, Joe Glessner, Edwin Lin, Martina Brueckner, Richard Lifton, Elizabeth Goldmuntz, Wendy K. Chung, Yufeng Shen "CANOES: detecting rare copy number variants from whole exome sequencing data." Nucleic Acids Research, Volume 42, Issue 12, 8 July 2014, Page e97 https://doi.org/10.1093/nar/gku345
PMID: 24771342
PMCID: PMC4081054


Download and documentation







If you find errors, please report here.

SECTIONS

Tutorials
In-house software
Blog
News
Find Jobs
History
Definition of Bioinformatics
ENCYCLOPEDIA
COVID-19
⚬ Timeline of outbreak
⚬ Blog
⚬ Scientific Facts
⚬ Daily statistics
⚬ News


TOOLS


1. SNP Tools
2. GWAS Tools
3. Genotype Imputation Tools
4. MSA tools
5. CNV tools
6. WGA tools
7. RNA-seq tools
8. Proteomics Tools
9. Nucleic Acid Structure Analysis Tools
10. Nucleic Acid Sequence Analysis Tools
11. Sequence Logo Tools
12. In-house Software Tools

Find thousands of Bioinformatics and Life Science software tools and databases in the newly launched




Ads