CLImAT-HET is a tool for the detection of subclonal copy number variation (CNV) and loss of heterozygosity in tumor samples. The CLImAT-HET algorithm uses whole-genome sequencing (WGS) data and a factorial hidden Markov model.
Genetics; Whole genome sequencing; DNA structural variation; Oncology
Yu Z, Li A, Wang M "CLImAT-HET: detecting subclonal copy number alterations and loss of heterozygosity in heterogeneous tumor samples from whole-genome sequencing data." BMC Med Genomics. 2017 Mar 15;10(1):15. https://doi.org/10.1186/s12920-017-0255-4
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