For better experience, turn on JavaScript!

CNOGpro
Home » Tools » CNV Tools » CNOGpro

CNOGpro

CNOGpro is an R package for detection and identification of copy number variation (CNV) specifically in prokaryotic whole-genome sequencing data. The tool uses Hidden Markov Model (HMM) and bootstrapping.



CNOGpro

CNOGpro is an R package for detection and identification of copy number variation (CNV) specifically in prokaryotic whole-genome sequencing data. The tool uses Hidden Markov Model (HMM) and bootstrapping.

Topic

Model organisms; Genetic variation

Details

  • Operation: Copy number estimation
  • Software interface: Command-line user interface
  • Language: R
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: GNU GPL v2
    • Cost: Free
  • Version name: 1.1
    • Maturity: Mature
  • Credit: Norwegian University of Life Sciences (NMBU).
  • Contact: ola.brynildsrud _at_ nmbu.no
  • Collection: -

Publications

Brynildsrud O, Snipen LG1, Bohlin J "CNOGpro: detection and quantification of CNVs in prokaryotic whole-genome sequencing data." Bioinformatics. 2015 Jun 1;31(11):1708-15. https://doi.org/10.1093/bioinformatics/btv070
PMID: 25644268


Download and documentation







If you find errors, please report here.

SECTIONS

Tutorials
In-house software
Blog
News
Find Jobs
History
Definition of Bioinformatics
ENCYCLOPEDIA
COVID-19
⚬ Timeline of outbreak
⚬ Blog
⚬ Scientific Facts
⚬ Daily statistics
⚬ News


TOOLS


1. SNP Tools
2. GWAS Tools
3. Genotype Imputation Tools
4. MSA tools
5. CNV tools
6. WGA tools
7. RNA-seq tools
8. Proteomics Tools
9. Nucleic Acid Structure Analysis Tools
10. Nucleic Acid Sequence Analysis Tools
11. Sequence Logo Tools
12. In-house Software Tools

Find thousands of Bioinformatics and Life Science software tools and databases in the newly launched




Ads