CNOGpro is an R package for detection and identification of copy number variation (CNV) specifically in prokaryotic whole-genome sequencing data. The tool uses Hidden Markov Model (HMM) and bootstrapping.
Model organisms; Genetic variation
Brynildsrud O, Snipen LG1, Bohlin J "CNOGpro: detection and quantification of CNVs in prokaryotic whole-genome sequencing data." Bioinformatics. 2015 Jun 1;31(11):1708-15. https://doi.org/10.1093/bioinformatics/btv070
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