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CNV_SS
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CNV_SS

A tool to detect copy number variation (CNV). The algorithm uses the Gaussian convolution at various set scales and finds the locations of CNVs by analysis of a finger print map.



CNV_SS

A tool to detect copy number variation (CNV). The algorithm uses the Gaussian convolution at various set scales and finds the locations of CNVs by analysis of a finger print map.

Topic

Biology; genetics

Details

  • Operation: Variation detection
  • Software interface: Command-line user interface
  • Language: MATLAB
  • Operating system: Microsoft Windows
  • License: Not stated
    • Cost: Free
  • Version name: -
  • Credit: The National Research Foundation of Korea (NRF) funded by the Ministry of Education, Science and Technology (2010-0007655).
  • Contact: Jeehee Yoon jhyoon _at_ hallym.ac.kr
  • Collection: -

Publications

Lee J, Lee U, Kim B, Yoon J "A computational method for detecting copy number variations using scale-space filtering." BMC Bioinformatics. 2013 Feb 18;14:57. https://doi.org/10.1186/1471-2105-14-57
PMID: 23418726
PMCID: PMC3637191


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