CNVcaller

CNVcaller is a tool for the detection of copy number variation (CNV) in large populations. Requirements: SAMtools 1.3 (using htslib 1.3), scikit-learn v0.19.0.

Topic

DNA structural variation; Genetic variation; Population genetics

Details

Operation: Genetic variation analysis; Copy number estimation
Software interface: Command-line user interface
Language: Python;Perl
Operating system: Linux; Microsoft Windows
License: GNU General Public License v3

Cost

Version name: -

Credit: The National Natural Science Foundation of China, the National Thousand Youth Talents Plan.
Contact: yu.jiang _at_ nwafu.edu.cn.
Collection: -

Publications

Wang X, Zheng Z, Cai Y, Chen T, Li C, Fu W, Jiang Y "CNVcaller: highly efficient and widely applicable software for detecting copy number variations in large populations." Gigascience. 2017 Dec 1;6(12):1-12. https://doi.org/10.1093/gigascience/gix115
PMID: 29220491
PMCID: PMC5751039

Download and documentation

Source: https://github.com/JiangYuLab/CNVcaller
Documentation: https://github.com/JiangYuLab/CNVcaller/
blob/master/README.md
Home page: https://github.com/JiangYuLab/CNVcaller

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CNVcaller

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TOOLS

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