CODEX2 is a tool for detecting copy number variation (CNV) in high-throughput sequencing data. The CODEX2 algorithm is well suited for studies with and without negative control samples and is sensitive enough to detect rare population frequencies.
DNA structural variation; Genetic variation; Population genetics; Oncology
Jiang Y, Wang R, Urrutia E, Anastopoulos IN, Nathanson KL, Zhang NR "CODEX2: full-spectrum copy number variation detection by high-throughput DNA sequencing." Genome Biol. 2018 Nov 26;19(1):202. https://doi.org/10.1186/s13059-018-1578-y
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