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CopyMap is a tool for detection of copy number variation (CNV) and allele frequencies in oligo-hybridization and CGH data. The CopyMap algorithm uses a time-dependent hidden Markov model (HMM) to consolidate data of copy number variants (CNVs) across various carriers.


DNA polymorphism


  • Operation: Polymorphism detection
  • Software interface: Command-line user interface
  • Language: C
  • Operating system: Microsoft Windows, Mac OS X, Linux
  • License: Not stated
  • Cost: -
  • Version name: 0.813
  • Maturity: Stable
  • Credit: National Institute of Health grant (R01GM073822 to J.B.).
  • Contact: Sebastian Zöllner szoellne _at_
  • Collection: -


Zollner S "CopyMap: localization and calling of copy number variation by joint analysis of hybridization data from multiple individuals." Bioinformatics. 2010 Nov 1;26(21):2776-7. Epub 2010 Oct 5.
PMID: 20926418
PMCID: PMC2981497

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