A tool for detection of somatic copy-number variation in tumor sample data. The DEFOR algorithm accounts for coverage, allele frequencies, and allows large-scale copy-number variation (CNV).
Medicine; Oncology; Molecular genetics; DNA polymorphism; DNA mutation
Zhang H, Zhan X, Brugarolas J, Xie Y "DEFOR: depth- and frequency-based somatic copy number alteration detector." Bioinformatics. 2019 Oct 1;35(19):3824-3825. https://doi.org/10.1093/bioinformatics/btz170
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