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DNACopyNumber
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DNACopyNumber

DNACopyNumber is a tool for detection of copy number variation (CNV). The DNACopyNumber algorithm us based on penalized least squares regression and bootstrapping to estimate the statistical significance.



DNACopyNumber

DNACopyNumber is a tool for detection of copy number variation (CNV). The DNACopyNumber algorithm us based on penalized least squares regression and bootstrapping to estimate the statistical significance.

Topic

Genetics; DNA structural variation; Oncology

Details

  • Operation: Polymorphism detection; Structural variation detection
  • Software interface: Command-line user interface
  • Language: -
  • Operating system: Linux
  • License: Not stated
    • Cost: -
  • Version name: -
    • Maturity: Legacy
  • Credit: National Institutes of Health (NIH), National Science Foundation (NSF).
  • Contact: Hongyu Zhao hongyu.zhao _at_ yale.edu
  • Collection: -

Publications

Huang T, Wu B, Lizardi P, Zhao H "Detection of DNA copy number alterations using penalized least squares regression." Bioinformatics. 2005 Oct 15;21(20):3811-7. Epub 2005 Aug 30. https://doi.org/10.1093/bioinformatics/bti646
PMID: 16131523


Download and documentation

Currently not available or not maintained.







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