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DeAnnCNV
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DeAnnCNV

DeAnnCNV (Detection and Annotation of Copy Number Variations) is a web-based tool to detect and annotate copy number variation (CNV) in whole genome exome sequencing. The algorithm is based on GPHMM tool (see links).



DeAnnCNV

DeAnnCNV (Detection and Annotation of Copy Number Variations) is a web-based tool to detect and annotate copy number variation (CNV) in whole genome exome sequencing. The algorithm is based on GPHMM tool (see links).

Topic

Genomics; Sequence analysis; DNA structural variation

Details

  • Operation: Variation detection; Annotation
  • Software interface: Web user interface
  • Language: PHP;Perl;MATLAB
  • Operating system: Microsoft Windows, Mac OS X, Linux
  • License: Not stated
    • Cost: Free
  • Version name: -
    • Maturity: Stable
  • Credit: National Natural Science Foundation of China, the National Basic Research Program of China, Major Program of Development Foundation of Hefei Center for Physical Science and Technology.
  • Contact: Ao Li aoli _at_ ustc.edu.cn | Qinghua Shi qshi _at_ ustc.edu.cn
  • Collection: -

Publications

Zhang Y, Yu Z, Ban R, Zhang H, Iqbal F, Zhao A, Li A, Shi Q "DeAnnCNV: a tool for online detection and annotation of copy number variations from whole-exome sequencing data." Nucleic Acids Res. 2015 Jul 1;43(W1):W289-94. Epub 2015 May 26. https://doi.org/10.1093/nar/gkv556
PMID: 26013811
PMCID: PMC4489280


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