EXCAVATOR2 is a tool for detecting copy number variation (CNV) in whole-genome exome sequencing data. The EXCAVATOR2 algorithm uses a hidden Markov model (HMM) and a method that classifies genomic regions into five CNV states. EXCAVATOR2 is an enchanced version of EXCAVATOR (see links).
D'Aurizio R, Pippucci T, Tattini L, Giusti B, Pellegrini M, Magi A "Enhanced copy number variants detection from whole-exome sequencing data using EXCAVATOR2." Nucleic Acids Res. 2016 Nov 16;44(20):e154. Epub 2016 Aug 9. https://doi.org/10.1093/nar/gkw695
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