G-CNV is a GPU-based tool to prepare sequences for copy number variation (CNV) analysis. This tool filters and masks low-quality reads and nucleotides discard adapter sequences and duplicated reads map and resolve mapping ambiguities compute and normalize read-depth.
Supported GPUs: CUDA enabled NVIDIA (kepler), cc 3.5.
Sequence analysis
Manconi A, Manca E, Moscatelli M, Gnocchi M, Orro A, Armano G, Milanesi L "G-CNV: A GPU-Based Tool for Preparing Data to Detect CNVs with Read-Depth Methods." Front Bioeng Biotechnol. 2015 Mar 10;3:28. https://doi.org/10.3389/fbioe.2015.00028
PMID: 25806367
PMCID: PMC4354384
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