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HD-CNV
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HD-CNV

HD-CNV is a tool for identifying copy number variant (CNV) sites of interest by comparing CNVs between different samples. The algorithm finds cliques in a graph and produces spread sheet data and UCSC Genome Browser track files.



HD-CNV

HD-CNV is a tool for identifying copy number variant (CNV) sites of interest by comparing CNVs between different samples. The algorithm finds cliques in a graph and produces spread sheet data and UCSC Genome Browser track files.

Topic

Biology; genetics; molecular genetics; genetic variation

Details

  • Operation: Calculation; sequence composition calculation; repeat sequence organisation analysis
  • Input: CSV
  • Output: CSV; UCSC track files
  • Software interface: Command-line user interface; graphical user interface
  • Language: Java
  • Operating system: Linux; MACOS X; Microsoft Windows
  • License: Not stated
    • Cost: Free
  • Version name: 3
    • Maturity: Stable
  • Credit: Natural Sciences and Engineering Research Council (NSERC) of Canada.
  • Contact: jcamer7 _at_ uwo.ca
  • Collection: -

Publications

Butler JL, Osborne Locke ME, Hill KA, Daley M "HD-CNV: hotspot detector for copy number variants." Bioinformatics. 2013 Jan 15;29(2):262-3. https://doi.org/10.1093/bioinformatics/bts650
PMID: 23129301


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