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A tool for selecting a likelihood ratio based on SNP Chip LogR data for copy number variants (CNVs).


Biology; genetics


  • Operation: Variation analysis
  • Software interface: Command-line user interface
  • Language: R/Splus
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Credit: NIH grants ES009911 and CA127334, NSF FRG Grant DMS-0854973.
  • Contact: Hongzhe Li hongzhe _at_
  • Collection: -


Jeng XJ, Cai TT, Li H "Optimal Sparse Segment Identification with Application in Copy Number Variation Analysis." J Am Stat Assoc. 2010 Apr 1;105(491):1156-1166. Epub 2012 Jan 1.
PMID: 23543902
PMCID: PMC3610602

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