LRS

A tool for selecting a likelihood ratio based on SNP Chip LogR data for copy number variants (CNVs).

Topic

Biology; genetics

Details

Operation: Variation analysis
Software interface: Command-line user interface
Language: R/Splus
Operating system: Linux; Mac OS X; Microsoft Windows
License: Not stated

Cost

Version name: -

Credit: NIH grants ES009911 and CA127334, NSF FRG Grant DMS-0854973.
Contact: Hongzhe Li hongzhe _at_ upenn.edu
Collection: -

Publications

Jeng XJ, Cai TT, Li H "Optimal Sparse Segment Identification with Application in Copy Number Variation Analysis." J Am Stat Assoc. 2010 Apr 1;105(491):1156-1166. Epub 2012 Jan 1. https://doi.org/10.1198/jasa.2010.tm10083
PMID: 23543902
PMCID: PMC3610602

Download and documentation

Source: http://statgene.med.upenn.edu/R_package.
zip
Home page: http://statgene.med.upenn.edu/softprog.h
tml

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LRS

LRS

Topic

Details

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Download and documentation

TOOLS

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