For better experience, turn on JavaScript!



ParseCNV is a tool to associate copy number variation (CNV) in case-control design and family-based studies. The ParseCNV algorithm also implements quality control.


Genetics; population genetics; genetic variation


  • Operation: Correlation; statistical calculation
  • Software interface: Command-line user interface
  • Language: Perl
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: GNU General Public License v3
  • Cost: Free
  • Version name: 2
  • Credit: Institutional Development Award to the Center for Applied Genomics from The Children’s Hospital of Philadelphia (in part); Adele and Daniel Kubert donation; University of Pennsylvania Biomedical Graduate Studies; Cotswold foundation. Funding for open access charge: Cotswold foundation.
  • Contact: Glessner JT glessner _at_
  • Collection: -


Chih-Hao Chen, Hsing-Chung Lee, Qingdong Ling, Hsiao-Rong Chen, Yi-An Ko, Tsong-Shan Tsou, Sun-Chong Wang, Li-Ching Wu, H. C. Lee "ParseCNV integrative copy number variation association software with quality tracking" Nucleic Acids Research, Volume 39, Issue 13, 1 July 2011, Page e89
PMID: 23293001
PMCID: PMC3597648

Download and documentation

If you find errors, please report here.