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ParseCNV
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ParseCNV

ParseCNV is a tool to associate copy number variation (CNV) in case-control design and family-based studies. The ParseCNV algorithm also implements quality control.



ParseCNV

ParseCNV is a tool to associate copy number variation (CNV) in case-control design and family-based studies. The ParseCNV algorithm also implements quality control.

Topic

Genetics; population genetics; genetic variation

Details

  • Operation: Correlation; statistical calculation
  • Software interface: Command-line user interface
  • Language: Perl
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: GNU General Public License v3
    • Cost: Free
  • Version name: 2
  • Credit: Institutional Development Award to the Center for Applied Genomics from The Children’s Hospital of Philadelphia (in part); Adele and Daniel Kubert donation; University of Pennsylvania Biomedical Graduate Studies; Cotswold foundation. Funding for open access charge: Cotswold foundation.
  • Contact: Glessner JT glessner _at_ chop.edu
  • Collection: -

Publications

Chih-Hao Chen, Hsing-Chung Lee, Qingdong Ling, Hsiao-Rong Chen, Yi-An Ko, Tsong-Shan Tsou, Sun-Chong Wang, Li-Ching Wu, H. C. Lee "ParseCNV integrative copy number variation association software with quality tracking" Nucleic Acids Research, Volume 39, Issue 13, 1 July 2011, Page e89 https://doi.org/10.1093/nar/gks1346
PMID: 23293001
PMCID: PMC3597648


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