ReadDepth is an R package to detect copy number variation (CNV) in short-read sequencing data. The ReadDepth algorithm uses a statistical model to account for overdispersed data and does not need reference sample data.
Genetics; genetic variation
Miller CA, Hampton O, Coarfa C, Milosavljevic A "ReadDepth: a parallel R package for detecting copy number alterations from short sequencing reads." PLoS One. 2011 Jan 31;6(1):e16327. https://doi.org/10.1371/journal.pone.0016327
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