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SAD

SAD

SAD (Segmentation Analysis of DNA) is a tool for analysis of copy number variation (CNV). The SAD algorithm applies measurement theory, clustering algorithms, and uncomplicated, robust statistics in the interpretation of the analytical relations. The tool may be available by request (see contact).

Topic

Genetics; Genetic variation

Details

  • Operation: Variant detection
  • Software interface: Command-line user interface
  • Language: -
  • License: Not stated
  • Cost: -
  • Version name: -
  • Credit: National Science Council, Cathay General Hospital-NCU Collaboration, National Science Council and the Ministry of Education.
  • Contact: pairwise.gaussian.merging _at_ gmail.com | H. C. Lee hclee12345 _at_ gmail.com
  • Collection: -

Publications

Chen CH, Lee HC, Ling Q, Chen HR, Ko YA, Tsou TS, Wang SC, Wu LC, Lee HC "An all-statistics, high-speed algorithm for the analysis of copy number variation in genomes." Nucleic Acids Res. 2011 Jul;39(13):e89. Epub 2011 May 16. https://doi.org/10.1093/nar/gkr137
PMID: 21576227
PMCID: PMC3141250


Download and documentation

Currently not available or not maintained.








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