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A Matlab tool for detection and localization of copy number variation (CNV).


Oncology; Genetic variation; Sequencing


  • Operation: Mapping; Data handling; Copy number estimation; Genetic variation analysis
  • Software interface: Command-line user interface
  • Language: Matlab
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Other
  • Cost: Free
  • Version name: 1.0.1
  • Credit: The US National Institutes of Health (NIH) (grants 5U24CA126546 to M.M. and 5U54HG003-67 to E.S.L.).
  • Contact: Eric S. Lander lander _at_
  • Collection: -


Chiang DY, Getz G, Jaffe DB, O'Kelly MJ, Zhao X, Carter SL, Russ C, Nusbaum C, Meyerson M, Lander ES "High-resolution mapping of copy-number alterations with massively parallel sequencing." Nat Methods. 2009 Jan;6(1):99-103.
PMID: 19043412
PMCID: PMC2630795

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