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ShinyCNV is a tool for visualization of copy number variation (CNV) and single nucleotide polymorphism (SNP) data from Illumina and Affymetrix platforms. Users can both automatically and semi-manually edit the data.




  • Operation: Visualisation
  • Input: SNP Name; Chr; Position; Log R Ratio; B Allele Freq
  • Output: CNV regions data
  • Software interface: Command-line user interface; web user interface
  • Language: R
  • Operating system: Linux; MAC OS X; Microsoft Windows
  • License: Not stated
  • Cost: Free
  • Version name: 1.0
  • Credit: American Lebanese Syrian Associated Charities of St. Jude Children’s Research Hospital, St. Baldrick’s Foundation Robert J. Arceci Innovation Award (to C.G.M), National Cancer Institute (NCI) Outstanding Investigator Award R35 CA197695 (to C.G.M.), National Institute of General Medical Sciences (NIGMS) P50 GM115279 (to C.G.M) and the NCI grants P30 CA021765 (St. Jude Cancer Center Support Grant).
  • Contact: gzhmat _at_
  • Collection: -


Gu Z, Mullighan CG "ShinyCNV: a Shiny/R application to view and annotate DNA copy number variations." Bioinformatics. 2019 Jan 1;35(1):126-129.
PMID: 30561549
PMCID: PMC6298054

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