ShinyCNV

ShinyCNV is a tool for visualization of copy number variation (CNV) and single nucleotide polymorphism (SNP) data from Illumina and Affymetrix platforms. Users can both automatically and semi-manually edit the data.

Details
Topic
Publications
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ShinyCNV

Topic

Genetics

Details

Operation: Visualisation
Input: SNP Name; Chr; Position; Log R Ratio; B Allele Freq
Output: CNV regions data
Software interface: Command-line user interface; web user interface
Language: R
Operating system: Linux; MAC OS X; Microsoft Windows
License: Not stated

Cost

Version name: 1.0

Credit: American Lebanese Syrian Associated Charities of St. Jude Children’s Research Hospital, St. Baldrick’s Foundation Robert J. Arceci Innovation Award (to C.G.M), National Cancer Institute (NCI) Outstanding Investigator Award R35 CA197695 (to C.G.M.), National Institute of General Medical Sciences (NIGMS) P50 GM115279 (to C.G.M) and the NCI grants P30 CA021765 (St. Jude Cancer Center Support Grant).
Contact: gzhmat _at_ gmail.com
Collection: -

Publications

Gu Z, Mullighan CG "ShinyCNV: a Shiny/R application to view and annotate DNA copy number variations." Bioinformatics. 2019 Jan 1;35(1):126-129. https://doi.org/10.1093/bioinformatics/bty546
PMID: 30561549
PMCID: PMC6298054