WaveCNV is a software tool package to detect copy number variation (CNV). The WaveCNV algorithm uses translation-invariant discrete wavelet transforms to detect CNV breakpoints in next-generation sequencing (NGS) data. It also assigns alleles and determines the chromosomal ratio following duplication or loss.
Alternative names: WaveCNV-caller, WaveCNV-segmenter.
Genetics; DNA structural variation; Oncology
Holt C, Losic B, Pai D, Zhao Z, Trinh Q, Syam S, Arshadi N, Jang GH, Ali J, Beck T, McPherson J, Muthuswamy LB "WaveCNV: allele-specific copy number alterations in primary tumors and xenograft models from next-generation sequencing." Bioinformatics. 2014 Mar 15;30(6):768-74. Epub 2013 Nov 4. https://doi.org/10.1093/bioinformatics/btt611
PMID: 24192544
PMCID: PMC3957071
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