YMAP is a pipeline for detection and analysis of custom copy number variation (CNV), single nucleotide polymorphism (SNP) and loss of heterozygosity (LOH). YMAP makes figures, a summary of the analyses and displays them on a web page.
YMAP is a pipeline for detection and analysis of custom copy number variation (CNV), single nucleotide polymorphism (SNP) and loss of heterozygosity (LOH). YMAP makes figures, a summary of the analyses and displays them on a web page.
Credit:
The National Science Foundation, the CIFAR Genetic Networks Program, NIH Pre-Doctoral Training Grant, Human Frontiers Science Program, the Howard Hughes Medical Institute, the Burroughs Wellcome Fund, a National Institutes of Health PIONEER award, Sloan Fellowship, the National Institute of Allergy and Infectious Diseases (NIAID), the People Programme (Marie Curie Actions), the European Union's Seventh Framework Programme (FP7/2007-2013) under REA grant agreement number 303635 and an ERC Advanced Award.
Contact:
ymapsupport _at_ post.tau.ac.il
Collection: -
Publications
Abbey DA, Funt J, Lurie-Weinberger MN, Thompson DA, Regev A, Myers CL, Berman J "YMAP: a pipeline for visualization of copy number variation and loss of heterozygosity in eukaryotic pathogens." Genome Med. 2014 Nov 20;6(11):100. 2014. https://doi.org/10.1186/s13073-014-0100-8
PMID: 25505934
PMCID: PMC4263066