Zinfandel is a tool designed for detection of copy number variation (CNV) in low coverage data. It uses Hidden Markov Model (HMM) to estimate the coverage from multiple mate-pairs without designating single mate-pairs as outliers.
Whole genome sequencing; Genetics; Genetic variation
Shen Y, Gu Y, Pe'er I "A hidden Markov model for copy number variant prediction from whole genome resequencing data." BMC Bioinformatics. 2011;12 Suppl 6:S4. https://doi.org/10.1186/1471-2105-12-S6-S4
PMID: 21989326
PMCID: PMC3194192
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