aCNViewer is a tool for visualization of copy number variation (CNV) and loss of heterozygosity (LOH) in tumor samples. aCNViewer uses the Docker application. Requires: R, Python, Mode, Affymetrix power tools, Ascat, sequenza, and ggplot2.
Genetics; Molecular genetics; Genetic variation; DNA structural variation
Renault V, Tost J, Pichon F, Wang-Renault SF, Letouze E, Imbeaud S, Zucman-Rossi J, Deleuze JF, How-Kit A "aCNViewer: Comprehensive genome-wide visualization of absolute copy number and copy neutral variations." PLoS One. 2017 Dec 19;12(12):e0189334. eCollection 2017. https://doi.org/10.1371/journal.pone.0189334
PMID: 29261730
PMCID: PMC5736239
If you find errors, please report here.
SECTIONS
TutorialsFind thousands of Bioinformatics and Life Science software tools and databases in the newly launched
Ads