For better experience, turn on JavaScript!



aCNViewer is a tool for visualization of copy number variation (CNV) and loss of heterozygosity (LOH) in tumor samples. aCNViewer uses the Docker application. Requires: R, Python, Mode, Affymetrix power tools, Ascat, sequenza, and ggplot2.


Genetics; Molecular genetics; Genetic variation; DNA structural variation


  • Operation: Visualisation
  • Software interface: Command-line user interface
  • Language: R, Python
  • Operating system: Mac OS X, Linux
  • License: GNU General Public License v3
  • Cost: Free
  • Version name: 2.2
  • Maturity: Stable
  • Credit: -
  • Contact: Victor Renault or Alexandre How-Kit aCNViewer _at_
  • Collection: -


Renault V, Tost J, Pichon F, Wang-Renault SF, Letouze E, Imbeaud S, Zucman-Rossi J, Deleuze JF, How-Kit A "aCNViewer: Comprehensive genome-wide visualization of absolute copy number and copy neutral variations." PLoS One. 2017 Dec 19;12(12):e0189334. eCollection 2017.
PMID: 29261730
PMCID: PMC5736239

Download and documentation

If you find errors, please report here.