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A pipeline to detect, visualize, and edit copy number variation (CNV). iCopyDAV has the following m,odules: data pre-treatment, segmentation, variant calling, annotation and visualization. Requires: samtools, bedtools, openMPI, and the R packages: DNAcopy, ParDNAcopy, quantsmooth, GenomicAlignments, and rtracklayer. iCopyDAV is also available as a Docker image.


Biology; genetic variation


  • Operation: Variance detection; visualization; sequence annotation
  • Software interface: Command-line user interface
  • Language: C++:R
  • Operating system: Linux; Mac OS X
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Credit: University Grants Commission (UGC)
  • Contact: vogetisri.harsha _at_
  • Collection: -


Dharanipragada P, Vogeti S, Parekh N "iCopyDAV: Integrated platform for copy number variations-Detection, annotation and visualization." PLoS One. 2018 Apr 5;13(4):e0195334.
PMID: 29621297
PMCID: PMC5886540

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