A pipeline to detect, visualize, and edit copy number variation (CNV). iCopyDAV has the following m,odules: data pre-treatment, segmentation, variant calling, annotation and visualization. Requires: samtools, bedtools, openMPI, and the R packages: DNAcopy, ParDNAcopy, quantsmooth, GenomicAlignments, and rtracklayer. iCopyDAV is also available as a Docker image.
Biology; genetic variation
Dharanipragada P, Vogeti S, Parekh N "iCopyDAV: Integrated platform for copy number variations-Detection, annotation and visualization." PLoS One. 2018 Apr 5;13(4):e0195334. https://doi.org/10.1371/journal.pone.0195334
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