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rSW-seq
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rSW-seq

rSW-seq is a tool to detect copy number variation (CNV). The rSW-seq method uses the Smith-Waterman local alignment algorithm with single-end sequencing data as the basis. The tool is available from the Authors upon request.



rSW-seq

rSW-seq is a tool to detect copy number variation (CNV). The rSW-seq method uses the Smith-Waterman local alignment algorithm with single-end sequencing data as the basis. The tool is available from the Authors upon request.

Topic

Genetics; Oncology; genetic variation

Details

  • Operation: variation detection
  • Software interface: Command-line user interface
  • Language: C
  • Operating system: Linux
  • License: Not stated
    • Cost: Free
  • Version name: -
    • Maturity: Stable
  • Credit: -
  • Contact: Tae-Min Kim tae-min_kim _at_ hms_harvard.edu | Lovelace J Luquette lovelace_luquette _at_ hms.harvard.edu | Ruibin Xi ruibin_xi _at_ hms.harvard.edu | Peter J Park peter_park _at_ harvard.edu
  • Collection: -

Publications

Kim TM, Luquette LJ, Xi R, Park PJ "rSW-seq: algorithm for detection of copy number alterations in deep sequencing data." BMC Bioinformatics. 2010 Aug 18;11:432. https://doi.org/10.1186/1471-2105-11-432
PMID: 20718989
PMCID: PMC2939611


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