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sCNAphase
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sCNAphase

sCNAphase is a tool for genotyping copy number variation (CNV) in haplotype resolved whole-genome sequencing data. The sCNAphase algorithm designed is for the analysis of low cellularity aneuploid tumors.



sCNAphase

sCNAphase is a tool for genotyping copy number variation (CNV) in haplotype resolved whole-genome sequencing data. The sCNAphase algorithm designed is for the analysis of low cellularity aneuploid tumors.

Topic

Genetics; Genotype and Phenotype; Oncology

Details

  • Operation: Genotyping
  • Software interface: Command-line user interface
  • Language: C++;R
  • Operating system: Microsoft Windows, Mac OS X, Linux
  • License: GNU Lesser General Public License
    • Cost: Free
  • Version name: 1.4.1
    • Maturity: Stable
  • Credit: Cancer Council Queensland, Cancer Council Queensland.
  • Contact: l.coin _at_ uq.edu.au
  • Collection: -

Publications

Chen W, Robertson AJ, Ganesamoorthy D, Coin LJM "sCNAphase: using haplotype resolved read depth to genotype somatic copy number alterations from low cellularity aneuploid tumors." Nucleic Acids Res. 2017 Mar 17;45(5):e34. https://doi.org/10.1093/nar/gkw1086
PMID: 27903916
PMCID: PMC5389684


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