An automatic SNP scoring tool for in- and outbreeding species. Customized pipeline for calling and filtering of SNPs from Illumina Infinium arrays. ASSIsT builds on GenomeStudio-derived data and identifies markers that follow a bi-allelic genetic model and show reliable genotype calls, and re-edits SNP calls.
Biology, Genetics, DNA polymorphism
Di Guardo M, Micheletti D, Bianco L, Koehorst-van Putten HJ, Longhi S, Costa F, Aranzana MJ, Velasco R, Arús P, Troggio M, van de Weg EW "ASSIsT: an automatic SNP scoring tool for in- and outbreeding species." Bioinformatics 2015; 31(23):3873-4 https://doi.org/10.1093/bioinformatics/btv446
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