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AffyPipe

AffyPipe

A software tool combining all Affymetrix software. It also allows editing of SNP probe classes directly and to export genotypes in PLINK format.

Topic

Genotype and phenotype, DNA polymorphism, Population genomics

Details

  • Operation: Genotyping, SNP detection
  • Software interface: Command-line interface
  • Language: Python
  • Operating system: Linux, Mac OS X
  • License: GNU GPL
  • Cost: -
  • Version name: -
  • Credit: Nicolazzi EL, Iamartino D, Williams JL.
  • Contact: Ezequiel Nicolazzie ezequiel.nicolazzie at tecnoparco.org
  • Collection: -

Publications

Nicolazzi EL, Iamartino D, Williams JL "AffyPipe: an open-source pipeline for Affymetrix Axiom genotyping workflow." Bioinformatics 2014; 30(21):3118-9 https://doi.org/10.1093/bioinformatics/btu486
PMID: 25028724
PMCID: PMC4609010


Download and documentation




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