For better experience, turn on JavaScript!



A software tool combining all Affymetrix software. It also allows editing of SNP probe classes directly and to export genotypes in PLINK format.


Genotype and phenotype, DNA polymorphism, Population genomics


  • Operation: Genotyping, SNP detection
  • Software interface: Command-line interface
  • Language: Python
  • Operating system: Linux, Mac OS X
  • License: GNU GPL
  • Cost: -
  • Version name: -
  • Credit: Nicolazzi EL, Iamartino D, Williams JL.
  • Contact: Ezequiel Nicolazzie ezequiel.nicolazzie at
  • Collection: -


Nicolazzi EL, Iamartino D, Williams JL "AffyPipe: an open-source pipeline for Affymetrix Axiom genotyping workflow." Bioinformatics 2014; 30(21):3118-9
PMID: 25028724
PMCID: PMC4609010

Download and documentation

If you find errors, please report here.